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Alternaria Leaf Spot

Alternaria Leaf Spot

Alternaria macrospora


In a Nutshell

    Circular brown to gray spots with purple margins on leavesThe center of the spots dries gradually and often fall outOlder spots coalesce and form bigger, irregular areas on the leaf blade

Hosts: %1$s

· Cotton


Early infections of leaves and bracts produce small, circular, brown to tan spots with purple margins varying in size from 1 to 10 mm in diameter. These spots often show a concentric growth that derives in a zonation pattern, defined more clearly on the upper surface. As they grow, their center gradually becomes dry and turns grayish, occasionally cracking and falling out (shot-hole effect). These spots may also coalesce and produce irregular dead areas in the middle of the leaf blade. However, under humid conditions, the fungi produce and release a considerable amount of spores, which may result in sooty black appearance of the lesions. On stems, the development of lesions begin as small sunken spots which may later develop into cankers, splitting and cracking the tissue. Flowers buds may be shed in the case of severe infections, which eventually may lead to the failure of boll development.


The symptoms are caused by the fungus Alternaria macrospora, which survives on cotton residues if no living tissue or alternative host is available. The pathogen spreads through air-borne spores and water splashing onto healthy plants. Not surprisingly, the production of spores within the leaf spots as well as the infection process is favored by wet weather and temperatures of about 27 °C. Plants are most susceptible at the seedling stage and late in the season during the senescence of leaves. The infection risk decreases from the lower to upper cotton leaves. Under favorable conditions for the fungi, susceptible varieties of cotton can loose a large amount of leaves rapidly (defoliation), especially where the boll stalk becomes infected. Symptom development is favored by added physiological or nutritional stress for the plant e.g. heavy fruit load or premature senescence.

Biological Control

Seed treatment with Pseudomonas fluorescens (10g/kg seeds) and spraying of 0,2% every 10 days reduce the infection significantly.

Chemical Control

Always consider an integrated approach with preventive measures together with biological treatments if available. Usually, the disease is not lowering the yield to the extent that justifies a specific fungicidal treatment. In severe cases, fungicides like maneb, mancozeb, tebuconazole and difenoconazole can be used to control Alternaria leaf spot. Seed treatment with strobilurins (e.g. trifloxystrobin) or sterol biosynthesis inhibitors (e.g. triadimenol, ipconazole) can be used to make seeds resistant to the pathogen.

Preventive Measures

    Plant resistant or tolerant varietiesRegularly monitor for symptoms of the diseaseRemove plant residues and burn them at a distance from the cotton fieldAvoid plant stress, especially potassium deficiencyPractice crop rotation with non-hosting crops, e.gcerealsRemove severely infected cotton plants and destroy themProvide sufficient space between plants to increase air circulationRemove tall grasses and weeds in the fieldTilling in fall aids in breaking down the remaining residue left from infected plants